;General parameters
[General]
; type of analysis (miRNA, mRNA or circRNA)
type=mRNA
;0 for no verbose, otherwise to print "almost" everything
verbose=0
; Folder for miRNA reads
read_dir=/mnt/beegfs/Bioinformatica/EXT/18-EXT-24-Laura_Lozano/Analisis/reads/ITS2/
; label for the analsysis
label=mRNA_mouse
; ; Folder where miARma has been instaled
miARmaPath=/home/eandres/bin/miARma/
; Number of process to run at the same time
threads=20
; Folder to store results
output_dir=/mnt/beegfs/Bioinformatica/EXT/18-EXT-24-Laura_Lozano/Analisis/miARma_ITS2/
organism=human
;Type of sequencing ; could be Paired or Single. [Single by default]
seqtype=Paired
#Whether the data is from a strand-specific assay (yes, no or reverse, yes by default) for featureCounts analysis
strand=no
stats_file=/mnt/beegfs/Bioinformatica/EXT/18-EXT-24-Laura_Lozano/Analisis/miARma_ITS2//miARma_stat.15247.log
logfile=/mnt/beegfs/Bioinformatica/EXT/18-EXT-24-Laura_Lozano/Analisis/miARma_ITS2//miARma_logfile.15247.log

#stats_file=/mnt/beegfs/Bioinformatica/EXT/18-EXT-24-Laura_Lozano/Analisis/miARma_16S//miARma_stat.113645.log
#logfile=/mnt/beegfs/Bioinformatica/EXT/18-EXT-24-Laura_Lozano/Analisis/miARma_16S//miARma_logfile.113645.log
#stats_file=/mnt/beegfs/Bioinformatica/EXT/18-EXT-24-Laura_Lozano/Analisis/miARma//miARma_stat.39536.log
#logfile=/mnt/beegfs/Bioinformatica/EXT/18-EXT-24-Laura_Lozano/Analisis/miARma//miARma_logfile.39536.log
[Quality]
; Character string to put in the name of the results directory
prefix=Pre